According to eyewitnesses, a green Skoda car pull up outside the church shortly after midnight. Two men got out , one of them talked shortly on his mobile phone, and the explosion occurred almost immediately after they left the scene. On the back of the Skoda was a sticker with the words "the rest is coming" (video of car explosion and Muslims shouting "Allah Akbar").

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To clear his security forces of negligence, the Minister of Interior said that the blast was an "individual" case, caused by a single suicide terrorist detonating his vest, and has nothing to do with an exploding car. The governor of Alexandria claimed the attack as being aimed at Muslims and Christians alike.